Business Manager lets you to delete up to 1000 customers at once using the standard
method.
This can be a timely process if you want to delete a large number of customers. Using
the Import & Export feature, you can delete as many customers as you need at once.
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Select
site > Merchant Tools >
Customers > Import & Export.
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In the Customers section, click Export.
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Select the customers you want to delete and click Next.
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Select Export Selected Customers.
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For Exported File, enter a file name, and click Export.
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In the Customers section, click Import.
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Select the file that you created and click Next.
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After the file has been validated click Next.
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Click DELETE, and click Import.